5-Title: Genetic variation in intron 2 region of myostatin gene in Marwari sheep of Rajasthan

5-Title: Genetic variation in intron 2 region of myostatin gene in Marwari sheep of Rajasthan

Authors: Govind Singh Dhakad, GC Gahlot, Navav Singh, PC Sharma, Manoj Kumar and Rakesh Kumar

Source: Ruminant Science (2022)-11(1):25-28.

How to cite this manuscript: Dhakad Govind Singh, Gahlot GC, Singh Navav, Sharma PC, Kumar Manoj and Kumar Rakesh (2022). Genetic variation in intron 2 region of myostatin gene in Marwari sheep of Rajasthan. Ruminant Science 11(1):25-28.

Abstract

The economic success of small ruminant based livestock production system depends on the factors affecting the muscular growth. Myostatin (MSTN), a negative regulator of skeletal muscle development in mammals, represents a key target for genetic investigations in meat-producing animals, with mutations responsible for increased skeletal-muscle mass, which was described in several livestock species. The present study aimed to investigate the genetic variation in the intron 2 region of the myostatin gene in Marwari lambs through single nucleotide polymorphisms (SNP’s) based markers. Blood samples were collected from randomly selected Marwari sheep ((n=71), and DNA was extracted using the spin column method. A 311bp fragment comprising the intron 2 region of the MSTN gene was amplified through PCR using designed homologous primers (GenBank accession number JN856480) at an annealing temperature of 54°C. Initial screening of collected specimens was carried out through single stranded conformation polymorphism (SSCP) and showed two different conformations (AA and AB) in the intron 2 region of the MSTN gene in Marwari sheep. The frequencies of “AA” and “AB” genotypes were observed to be 0.86 (n=61) and 0.14 (n=10), respectively. Sequencing and clustal analysis was carried out to detect SNP’s responsible for genetic variation among individuals. The two conformational patterns detected were observed to be the result of three different nucleotides substitution in the amplified fragment.

References

Abbasi MA, Abdolllahi-Arpanahi R, Maghsoudi A, Vaez Torshizi R and  Nejati-Javaremi A (2012). Evaluation of models for estimation of genetic parameters and maternal effects for early growth traits of Iranian Baluchi sheep. Small Ruminant Research 104:62-69.

Arya Ashwani, Verma Archana, Gupta ID, Kumar Dhaman, Magotra Ankit, Mir Mohsin Ayoub and Singh Arun Pratap (2016). Influence of parity, THI and HSPB1 gene SNP on heat tolerance indicator traits in murrah buffalo (Bubalus bubalis). Ruminant Science 5(2):143-148.

Azar MI, Dehnavi E, Yousefi S and Shahmohamadi I (2012). Polymorphism of calpastatin, calpain and myostatin genes in native Dalagh sheep in Iran. Slovak Journal of Animal Science 45(1):1-6.

Bellinge RH, Liberles DA, Iaschi SP and Brien PA (2005). Myostatin and its implications on animal breeding: A review. Animal Genetics 36:1-6.

Boman IA, Klemsetsdal G, Blichfeldt T and Nafstad O (2009). A frame shift mutation in the coding region of the myostatin gene (MSTN) affects carcass conformation and fatness in Norwegian white sheep (Ovis aries). Animal Genetics 40:418-422.

Clop A, Marcq F, Takeda H, Pirottin D, Tordoir X, Bibé B,  Bouix J,  Caiment F, Elsen JM, Eychenne F, Larzul C, E Laville, F Meish, D Milenkovic, J Tobin, Charlier C  and Georges M (2006). A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nature Genetics 38(7):813-818.

Dehnavi E, Azari AM, Hasani S, Nassiry MR, Mohajer M, Khan AA, Shah ML and Yousefi S (2012). Polymorphism of myostatin gene in intron 1, 2 and exon 3 and their associations with yearling weight using PCR-RFLP and PCR-SSCP techniques in Zel sheep. Biotechnology Research International 1-5.

Dimitrova I, Bozhilova-Sakova M, Stancheva N and Tzonev T (2016). Molecular Analysis Of Ovine Myostatin Gene (MSTN) In Northeast Bulgarian Merino Sheep Breed Using PCR-RFLP. Bulgarian Journal of Agricultural Science 22(2):1-3.

Divya Katam, Kurian Elizabeth, Naicy T, Manoj M, Harshan Hiron M, Priya M and Aravindakshan TV (2021). A novel snp identified in intron1 of superoxide dismutase 1 (SOD1) in Vechur cattle of Kerala. Ruminant Science 10(2):261-264.

Farhadian M, Hashemi A, Mardani K, Darvishzadeh R and Ranjbari M (2011). Allelic polymorphism of ‘Makoei’ sheep myostatin gene identified by polymerase chain reaction and single-strand conformation polymorphism. African Journal of Biotechnology 10(50): 10083-10086.

Farhadian M and Hashemi A (2016). Molecular characterization and phylogeny-based analysis of intron I sequence of myostatin (MSTN) gene in Iranian Makuei sheep breed. Annals of Animal Science 16:1007-1018.

Grisolia AB, D Angelo GT, PortoNeto LR and Siqueira F (2009). Myostatin (GDF8) single nucleotide polymorphisms in Nellore cattle. Genetics and Molecular Research 8:822-830.

Grobet L, Martin LJ, Poncelet D, Pirottin D, Brouwers B, Riquet J, Schoeberlein A, Dunner S, Menissier F, Massabanda J, Fries R, Hanset R and Georges M (1997). A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nature Genetics 17:71-74.

Hiremath Vaishali, Appannavar MM, HM Yathish, Sangamesh, Kartikesh SM, Kasaralikar VR and Hiremath Siddalingaswamy (2017). Identification of SNP in growth hormone gene and their association with growth traits in Kenguri sheep. Ruminant Science 6(2):221-224.

Kunhareang S, Zhou H and Hickford JGH (2009). Allelic variation in the porcine MYF5 gene detected by PCR-SSCP. Molecular Biotechnology 41:208-212.

Laurie AD and George PM (2009). Evaluation of high-resolution melting analysis for screening the LDL receptor gene. Clinical Biochemistry 42:528-535.

Magotra Ankit, Gupta ID, Verma Archana, Alex Rani, Vineeth MR, Arya Ashwani, Kumar  Vijay and Tiwari  DK (2016). Genetic profiling and validation of point mutation in exon 10 of breast cancer 1 gene (BRCA1) and its relationship with clinical mastitis in Sahiwal cattle. Ruminant Science 5(1):1-4.

McFarland DC, Velleman SG, Pessall JE and Liu C (2007). The role of myostatin in chicken (Gallus domesticus) myogenic satellite cell proliferation and differentiation. Genetics Endocrinology 151(3):351-357.

Singh AP, Ramesha KP, Mir MA, Arya Ashwani and Isloor S (2018). Effect of SSCP variants of lactoferrin gene, parity and stage of lactation on milk lactoferrin and somatic cell count in Murrah buffaloes. Ruminant Science 7(2):171-178.

Stinckens, A, Luyten T, Bijttebier J, Vanden M, K  Dieltiens D, Janssens S, DeSmet, S, Georges M and Buys N (2008). Characterization of the complete porcine MSTN gene and expression levels in pig breeds differing in muscularity. Animal Genetics 39(6):586-96.

Xiang-Long L, Zhao-Long W, Zheng-Zhu L, Yuan-Fang G, Rong-Yan Z and Gui-Ru Z (2006). SNP identification and analysis in part of intron 2 of goat MSTN gene and variation within and among species, Journal of Heredity 97(3):285-289.

Yadav  AK and Mukherjee Anupama (2018). Genetic variants in exon 4 region of FABP3 gene in relation to milk production traits in Sahiwal and Karan Fries cattle. Ruminant Science 7(2): 189-198.

Yadav DK and Paul AK (2009). Fitting of growth models and evaluation of Marwari sheep under field conditions. Indian Journal of Animal Sciences 79:1242-1244.